YI1&KO1

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 RFLP CC01756 CryJUG0358 / CryJUG1805 / YI_EcoRV/ Scr_YI/
YI 19.063 RFLP CC01884 CryJUG0391 / YI_EcoRI/ Scr_YI/
YI 24.006 RFLP CC01802 CC01802F / CC01802R / YI_EcoRV/ Scr_YI/
kxo 34.398 RAPD A19c
YI 34.659 RFLP CC00911 CryJUG2353 / CC00911R / YI_EcoRI/ Scr_YI/
kxo 39.882 RFLP CD01762 CD01762R / Scr_kxo/
YI 40.966 RFLP CP01510 YI_HindIII/
kxo 43.744 RAPD B11a
YI 44.595 RFLP CP01207 YI_EcoRI/
kxo 48.256 RFLP CD01617 CryJUG1779 / CD01617R / Scr_kxo/ Scr_YI/
YI 50.224 SNP Chi1_2site1
YI 50.282 CAPS CC00616 CryJUG0005 / Primer BclI/ Nat_BclI/
YI 50.537 SNP Chi1_3
YI 51.068 SNP Chi1_2site2
YI 51.479 CAPS CC00411 CC00411F / CC00411R / Primer NspV/ Nat_NspV/
YI 53.741 CAPS C2 CC00787 CryJUG0056 / CryJUG0057 / Primer AseI/
kxo 54.418 RFLP CD01914 CryJUG2768 / Scr_kxo/ Scr_YI/
YI 55.306 RFLP CD00633 CryJUG2768 / YI_EcoRI/ Scr_kxo/ Scr_YI/
YI 55.514 RFLP CC01747 CryJUG1857 / YI_HindIII/ Scr_YI/
YI 60.330 SSR CS2169 Primer Map_Gel Polymorphism
kxo 61.466 RFLP CD00810 CryJUG0740 / CD00810R / Scr_kxo/ Scr_YI/
YI 62.890 CAPS CC01704 CryJUG0349 / Primer BamHI/
kxo 65.160 RFLP CD01852 CryJUG1230 / Scr_kxo/
kxo 65.834 RFLP CD01514 CryJUG1203 / CryJUG1211 / Scr_kxo/
kxo 66.803 RFLP CD01278 Scr_kxo/
YI 66.808 RFLP CD00440 CryJUG0161 / CD00440R / YI_HaeIII/ Scr_kxo/ Scr_YI/
YI 67.153 RFLP CC03330 CryJUG1639 / YI_BglII/ Scr_YI/
YI 70.848 CAPS CC03872 CC03872F / CC03872R / Primer TaqI/
kxo 73.416 RFLP CD00511 CryJUG1171 / Scr_kxo/ Scr_YI/
YI 75.528 RFLP CC01724 CryJUG0353 / YI_HindIII/ Scr_YI/
kxo 79.826 RFLP CD00536 CryJUG1174 / Scr_kxo/ Scr_YI/
kxo 80.230 RFLP CD00622 CryJUG1670 / Scr_kxo/
kxo 81.895 CAPS CC03133 CryJUG0641 / CryJUG1607 / Primer
YI 83.815 CAPS CC02895 CryJUG2021 / CC02895F / Primer TaqI/
YI 85.617 CAPS CC01698 CryJUG0347 / Primer RsaI/ Nat_RsaI/
kxo 89.596 RAPD K06a
YI 92.470 SSR CJG0175 Primer Map_Gel Polymorphism
YI 99.620 SSR CS1413 Primer Map_Gel Polymorphism
kxo 102.225 RFLP CD01761 CryJUG0705 / Scr_kxo/ Scr_YI/
YI 106.931 CAPS CC03367 CC03367F / CC03367R / Primer AluI/
kxo 107.955 RFLP CD00355 CD00355F / CD00355R / Scr_kxo/
kxo 109.835 CAPS CC01730 CryJUG0355 / CC01730F / Primer SphI/
kxo 110.005 RAPD O02a
YI 110.130 CAPS C1 CC00864 CryJUG1106 / Primer AluI/ BclI/ ScrFI/ Nat_AluI/
YI 111.424 RFLP CC01748 CryJUG0990 / CryJUG2549 / YI_DraI/ Scr_YI/
kxo 113.472 CAPS CC01748 CryJUG0990 / CryJUG2549 / Primer Nat_HhaI/
YI 114.508 SSR CJS0686 Primer Map_Gel Polymorphism
YI 115.868 RFLP R1 CC01674 CryJUG1164 / YI_BglII/ YI_EcoRV/ Scr_YI/
kxo 116.247 RFLP CD00857 CryJUG2384 / Scr_kxo/ Scr_YI/
YI 116.816 CAPS CC02123 CryJUG1596 / Primer NciI/
YI 117.385 CAPS C2 CC00864 CryJUG1106 / Primer AluI/ BclI/ ScrFI/ Nat_AluI/
YI 124.622 RFLP CC01825 CryJUG0183 / YI_HindIII/ Scr_YI/
YI 125.836 SNP Lcyb
kxo 127.184 CAPS CC00846 CryJUG0032 / CryJUG0161 / Primer
YI 128.850 RFLP CD00423 CryJUG0161 / CD00423F / YI_BglII/ YI_DraI/ Scr_kxo/ Scr_YI/
YI 135.720 RFLP CP01076 YI_DraI/
YI 138.413 RFLP CP01145 YI_EcoRV/
YI 157.685 RFLP CP01286 YI_DraI/










YI2&KO11_12

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 CAPS CC00342 CryJUG0052 / Primer HhaI/
YI 3.695 CAPS CC01876 CC01876F / CC01876R / Primer HincII/ NciI/
kxo 9.109 RFLP CD00337 CryJUG1559 / YI_EcoRI/ Scr_kxo/ Scr_YI/
kxo 9.109 RFLP CD01130 CryJUG1196 / Scr_kxo/ Scr_YI/
YI 11.176 SSR CS1737 Primer Map_Gel Polymorphism
YI 13.360 CAPS CC03416 CryJUG0673 / CryJUG1375 / Primer HaeIII/
YI 14.261 CAPS CC00493 CC00493F / CC00493R / Primer HhaI/ Nat_BglII/ Nat_HhaI/
YI 18.048 CAPS CC01125 CryJUG0943 / Primer DraI/ Nat_DraI/
kxo 18.344 CAPS CC00520 CryJUG2136 / Primer Nat_MluI/
YI 18.519 CAPS CD01875 CryJUG0943 / Primer RsaI/
kxo 20.162 RFLP CD00689 CryJUG0067 / CryJUG0136 / Scr_kxo/
YI 22.982 RFLP CC01831 CryJUG0752 / CryJUG2769 / YI_HaeIII/ Scr_YI/
YI 23.690 CAPS CC00734 CC00734F / CC00734R / Primer HincII/ Nat_HincII/
YI 37.346 RFLP CC01490 CryJUG0735 / YI_EcoRV/ Scr_YI/
YI 39.664 CAPS CC00390 CC00390F / CC00390R / Primer RsaI/
kxo 40.006 RFLP CD01547 CryJUG1348 / Scr_kxo/ Scr_YI/
kxo 40.038 RFLP CD00682 CD00682F / Scr_kxo/ Scr_YI/
kxo 41.075 RFLP R3 CD01924 CryJUG0815 / CD01924R / YI_DraI/ Scr_kxo/ Scr_YI/
YI 41.296 CAPS CC02583 CC02583F / CC02583R / Primer DdeI/ Nat_DdeI/
kxo 48.160 RFLP CD01946 Scr_kxo/ Scr_YI/
kxo 49.239 CAPS CC00283 CC00283F / Primer
YI 53.684 CAPS CC00707 CryJUG0735 / CryJUG2655 / Primer DraI/
YI 56.585 RFLP CC01912 CryJUG0398 / YI_HaeIII/ Scr_YI/
YI 58.259 RFLP CC01632 CryJUG0330 / YI_BglII/ YI_EcoRI/ Scr_YI/
YI 60.519 CAPS CC00432 CC00432F / CC00432R / Primer BstXI/
YI 67.673 RFLP R1 CC01488 CryJUG0307 / YI_EcoRI/ Scr_YI/
YI 70.968 RFLP CD00344 CryJUG1166 / YI_BglII/ Scr_kxo/ Scr_YI/
YI 77.115 RFLP CD00440 CryJUG0161 / CD00440R / YI_HaeIII/ Scr_kxo/ Scr_YI/
YI 84.329 RFLP CC01902 CC01902F / CC01902R / YI_HindIII/ Scr_YI/
kxo 85.378 RAPD B11b
YI 89.127 CAPS Cryj2 Primer
kxo 92.052 RFLP CD00934 CryJUG1189 / Scr_kxo/
kxo 95.036 RFLP CD01841 CryJUG1229 / Scr_kxo/
YI 96.195 CAPS CC02467 CryJUG2764 / CC02467R / Primer EcoO109I/ Nat_EcoO109I/
kxo 96.369 RFLP CD00432 Scr_kxo/
YI 97.191 RFLP R2 CC01488 CryJUG0307 / YI_EcoRI/ Scr_YI/
YI 98.184 RFLP CD00517 CryJUG1172 / YI_EcoRV/ Scr_kxo/ Scr_YI/
YI 103.950 CAPS CC02657 CryJUG1611 / CryJUG2784 / Primer BstOI/










YI3&KO13

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
kxo 0.000 CAPS CC00906 CryJUG0170 / CC00906R / Primer
kxo 1.479 RFLP R2 CD01924 CryJUG0815 / CD01924R / YI_DraI/ Scr_kxo/ Scr_YI/
kxo 2.518 RAPD G10b
YI 2.734 RFLP CC01508 CryJUG0928 / CC01508F / YI_BglII/ Scr_YI/
YI 15.383 CAPS CC00489 CryJUG0556 / Primer HinfI/ Nat_HinfI/
kxo 16.567 RFLP CD01154 CryJUG1197 / CD01154F / Scr_kxo/
kxo 19.142 RFLP R1 CD01924 CryJUG0815 / CD01924R / YI_DraI/ Scr_kxo/ Scr_YI/
YI 22.898 RFLP CP01501 YI_EcoRI/
YI 27.184 RFLP CC01634 CC01634F / YI_EcoRI/ Scr_YI/
YI 28.200 RFLP R2 CP01194 YI_HindIII/
YI 31.805 RFLP Cryj3.4
kxo 31.958 CAPS CC01641 CC01641F / CC01641R / Primer Nat_BstOI/
YI 32.965 CAPS CC01158 CryJUG0636 / CC01158F / Primer MspI/
YI 35.121 SSR CJS0268 Primer Map_Gel Polymorphism
kxo 35.296 RFLP CD01484 CryJUG0245 / Scr_kxo/
YI 35.410 RFLP CD01712 CryJUG1221 / CD01712R / YI_EcoRI/ Scr_YI/
YI 36.644 SNP GapC
YI 37.360 RFLP R2 CC01811 CryJUG0401 / YI_HindIII/ Scr_YI/
kxo 37.506 CAPS CC01811 CryJUG0401 / Primer
YI 37.539 CAPS CC02522 CryJUG0507 / Primer HinfI/ NdeII/ Nat_HinfI/
YI 39.795 CAPS CC02645 CC02645F / CC02645R / Primer BglII/
YI 40.164 RFLP R1 CC01811 CryJUG0401 / YI_HindIII/ Scr_YI/
YI 40.634 CAPS CD01712 CryJUG1221 / CD01712R / Primer EcoO109I/
YI 40.682 RFLP CD00344 CryJUG1166 / YI_BglII/ Scr_kxo/ Scr_YI/
kxo 42.709 RFLP R2 CD00334 CryJUG1163 / CryJUG2616 / YI_DraI/ Scr_kxo/ Scr_YI/
YI 44.084 RFLP CC01673 CryJUG1743 / CC01673F / YI_EcoRV/ Scr_YI/
YI 45.207 CAPS CC00673 CryJUG2348 / CC00673R / Primer MspI/ Nat_AluI/
YI 48.114 CAPS CC02856 CC02856F / CC02856R / Primer NdeII/
YI 54.394 CAPS CC02052 CC02052F / CC02052R / Primer HinfI/ MluI/
YI 54.742 SSR CJS0584 Primer Map_Gel Polymorphism
YI 55.896 SSR CS1895 Primer Map_Gel Polymorphism
YI 57.949 CAPS CC01620 CryJUG0123 / CryJUG0378 / Primer EcoT38I/
YI 59.569 SSR CS2024 Primer Map_Gel Polymorphism
YI 80.492 Other Cryj3.3R
YI 80.492 Other Cryj3.2P
YI 80.523 Other Cryj3.1R
YI 82.326 CAPS CC02713 CC02713F / CC02713R / Primer MspI/ Nat_MspI/
YI 86.396 CAPS CC03336 CryJUG2689 / CC03336R / Primer TaqI/
YI 86.630 CAPS CC00460 CryJUG0894 / Primer HaeIII/










YI4&KO4

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 RFLP R1 CC01650 CryJUG2748 / YI_EcoRI/ Scr_YI/
YI 3.017 RFLP R2 CC01650 CryJUG2748 / YI_EcoRI/ Scr_YI/
YI 3.736 CAPS CC01721 CryJUG2745 / CryJUG3189 / Primer RsaI/ Nat_RsaI/
YI 5.107 CAPS C2 CC03098 CC03098R / Primer AvaI/ TaqI/ Nat_NdeII/
kxo 5.288 CAPS CC00802 CryJUG2748 / Primer Nat_BclI/
YI 7.162 CAPS C3 CC03098 CC03098R / Primer AvaI/ TaqI/ Nat_NdeII/
YI 7.629 CAPS C4 CC03098 CC03098R / Primer AvaI/ TaqI/ Nat_NdeII/
kxo 9.750 RFLP CD00019 CryJUG2438 / CryJUG2748 / Scr_kxo/
YI 15.674 RFLP CC01479 CryJUG2118 / YI_EcoRI/ Scr_YI/
YI 19.303 RFLP R1 CP01262 YI_DraI/
kxo 21.299 RFLP CD00352 CryJUG0831 / CryJUG2732 / Scr_kxo/
YI 22.737 RFLP CP01379 YI_HindIII/
kxo 24.487 RFLP CD01256 CryJUG2824 / CD01256F / Scr_kxo/
YI 25.972 RFLP CC01664 CryJUG0337 / CC01664F / YI_DraI/ Scr_YI/
kxo 30.370 CAPS CC01911 CryJUG1809 / Primer
kxo 39.402 RAPD A08b
YI 43.814 SSR CJS0333 Primer Map_Gel Polymorphism
YI 47.292 RFLP R1 CC01505 CryJUG1748 / YI_BglII/ Scr_YI/
kxo 51.817 RAPD R02a
YI 57.514 CAPS CC02752 CryJUG1464 / CC02752F / Primer HaeIII/ Nat_ALP/ Nat_MspI/
YI 58.726 CAPS CC00421 CryJUG0080 / Primer StyI/
YI 62.398 CAPS CC00622 CryJUG0704 / Primer ScrFI/ Nat_ScrFI/
YI 63.369 CAPS CC00404 CryJUG0704 / Primer ScrFI/ Nat_Bst0I/
YI 64.590 CAPS CC01319 CryJUG0168 / Primer AluI/ Nat_AluI/
YI 73.129 CAPS CC01402 CryJUG0704 / Primer ALP/
YI 73.835 CAPS CC00980 CryJUG0704 / Primer ALP/
kxo 75.190 CAPS CC01014 CryJUG0198 / CryJUG0704 / Primer Nat_HhaI/
kxo 75.304 CAPS CC00392 CryJUG0069 / Primer Nat_StyI/
YI 75.820 CAPS CC00344 CryJUG0168 / Primer HhaI/ RsaI/ Nat_HhaI/
YI 97.468 CAPS CC00536 CryJUG0704 / Primer ScrFI/










YI5&KO7

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 RFLP CD00504 CryJUG0723 / YI_EcoRV/ Scr_kxo/ Scr_YI/
YI 7.053 CAPS CC00462 CryJUG1016 / CC00462F / Primer EcoO109I/ Nat_NciI/
YI 7.674 RFLP CD01091 CryJUG1194 / YI_EcoRI/ Scr_kxo/ Scr_YI/
YI 10.195 RFLP CC01778 CryJUG0365 / YI_HindIII/ Scr_YI/
kxo 10.965 RFLP CD00217 CD00217R / Scr_kxo/ Scr_YI/
kxo 11.806 RFLP CD01079 Scr_kxo/
YI 13.232 RFLP CD00515 CryJUG1282 / YI_DraI/ Scr_kxo/ Scr_YI/
YI 14.087 RFLP CD00548 CryJUG1176 / YI_HindIII/ Scr_kxo/ Scr_YI/
YI 14.440 SSR CJS0002 Primer Map_Gel Polymorphism
YI 16.524 CAPS Cryj1 Primer
YI 16.997 CAPS CC02989 CryJUG1720 / CC02989F / Primer HaeIII/
kxo 23.300 RFLP CD01309 CryJUG2013 / CD01309R / Scr_kxo/ Scr_YI/
kxo 24.807 RFLP CD00785 CryJUG1187 / Scr_kxo/
YI 26.983 SSR CJG0125 Primer Map_Gel Polymorphism
kxo 34.961 RFLP CD00461 CryJUG1168 / Scr_kxo/
YI 35.812 RFLP CD00216 CD00216R / YI_EcoRI/ Scr_kxo/ Scr_YI/
kxo 48.424 RAPD K06b
kxo 51.752 Other GD3206
YI 52.456 RFLP CC01613 CC01613F / CC01613R / YI_EcoRV/ Scr_YI/
YI 53.177 CAPS CC01613 CC01613F / CC01613R / Primer BglI/ Nat_StyI/
kxo 54.954 CAPS CC01274 CryJUG2834 / Primer
YI 56.538 CAPS CC01367 CryJUG0236 / Primer HaeIII/ Nat_HaeIII/
kxo 57.122 CAPS CC01287 CryJUG2834 / Primer
YI 57.359 RFLP CC01767 CC01767F / CC01767R / YI_BglII/ Scr_YI/
YI 58.073 SSR CJG0170 Primer Map_Gel Polymorphism
YI 58.988 CAPS CC01717 CC01717F / CC01717R / Primer AseI/
kxo 59.254 RFLP CD01942 CD01942F / CD01942R / Scr_kxo/ Scr_YI/
YI 61.310 RFLP R2 CC01674 CryJUG1164 / YI_BglII/ YI_EcoRV/ Scr_YI/
kxo 61.967 RFLP CD00575 CryJUG1179 / Scr_kxo/
kxo 63.071 RFLP N11a
YI 64.144 SSR CJG0083 Primer Map_Gel Polymorphism
kxo 68.759 Other MT5002
YI 70.523 RFLP CD00195 YI_EcoRV/ Scr_kxo/ Scr_YI/
YI 75.546 SSR CS1281 Primer Map_Gel Polymorphism
YI 85.327 CAPS CC01303 CC01303F / CC01303R / Primer ScrFI/
kxo 85.742 RFLP CD01313 Scr_kxo/
YI 88.226 CAPS C2 CC00803 CryJUG0723 / Primer ALP/ HaeIII/ Nat_HaeIII/
kxo 99.382 CAPS CC02918 CryJUG1032 / Primer AluI/ NdeII/
YI 100.448 SSR CJS0331 Primer Map_Gel Polymorphism
YI 124.919 SSR CJS0520 Primer Map_Gel Polymorphism
YI 127.062 CAPS CC01176 CryJUG0233 / Primer HinfI/
YI 127.957 CAPS CC01928 CryJUG0402 / Primer HincII/
YI 129.174 CAPS CD00041 CryJUG1103 / CryJUG1155 / Primer HhaI/
YI 133.490 SSR CJS0955 Primer Map_Gel Polymorphism










YI6&KO14

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 CAPS C1 CD01111 CryJUG1195 / Primer EcoRV/
YI 7.153 CAPS CC02781 CryJUG0555 / Primer DraI/
YI 22.600 SSR CJS0665 Primer Map_Gel Polymorphism
YI 23.189 SSR CJG0122 Primer Map_Gel Polymorphism
kxo 24.301 CAPS CC02731 CryJUG0635 / CC02731F / Primer
YI 24.446 RFLP CP01463 YI_EcoRI/
kxo 25.092 CAPS CC00680 CryJUG0053 / CryJUG0054 / Primer
YI 27.472 CAPS CC01921 CryJUG0773 / Primer StyI/
kxo 30.707 RAPD O02b
YI 33.846 RFLP CC01814 CC01814F / CC01814R / YI_DraI/ Scr_YI/
kxo 40.522 RAPD D07d
YI 40.544 CAPS CC03430 CryJUG1534 / CryJUG2700 / Primer HindIII/
kxo 41.510 RFLP CD00791 CD00791F / CD00791R / Scr_kxo/
kxo 42.644 RFLP CD00788 Scr_kxo/
YI 43.985 RFLP CC01727 CryJUG1991 / YI_EcoRV/ Scr_YI/
YI 45.346 RFLP CC00308 CC00308F / CC00308R / YI_HindIII/ Scr_YI/
kxo 48.460 RFLP CD01839 CryJUG1232 / Scr_kxo/ Scr_YI/
YI 52.196 CAPS CC00318 CryJUG0400 / Primer AluI/
kxo 54.865 RAPD O04b
YI 57.903 RFLP CP01007 YI_EcoRV/
YI 64.655 RFLP R2 CP01262 YI_DraI/
YI 73.816 RFLP CC01635 CC01635F / CC01635R / YI_BglII/ Scr_YI/
YI 77.959 RFLP CC01510 CryJUG0753 / YI_EcoRI/ Scr_YI/
YI 82.036 RFLP CC01521 CryJUG1345 / YI_DraI/ Scr_YI/
YI 84.109 RFLP CC01520 CC01520F / CC01520R / YI_EcoRV/ Scr_YI/
YI 96.224 CAPS CC00784 CC00784F / CC00784R / Primer AluI/ Nat_AluI/
YI 98.380 RFLP R2 CC01654 CryJUG0249 / YI_HindIII/ Scr_YI/
YI 100.035 CAPS CC02469 CryJUG1410 / Primer AluI/
YI 102.052 RFLP CC01829 CC01829F / CC01829R / YI_DraI/ Scr_YI/
YI 104.066 RFLP R1 CC01654 CryJUG0249 / YI_HindIII/ Scr_YI/










YI7&KO2

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 RFLP CP01308
YI 3.042 RFLP R1 CC01791 CryJUG0933 / YI_HindIII/ Scr_YI/
YI 3.063 SSR CJG0078 Primer Map_Gel Polymorphism
YI 3.077 CAPS CC01625 CryJUG1922 / Primer HaeIII/ Nat_HaeIII/
YI 6.939 CAPS CC00613 CryJUG2388 / CryJUG2868 / Primer HinfI/ Nat_HinfI/
YI 12.769 SSR CJG0013 Primer Map_Gel Polymorphism
YI 18.636 SSR CJS0401 Primer Map_Gel Polymorphism
YI 24.229 CAPS CD02039 CryJUG0215 / CD02039R / Primer ALP/
kxo 24.539 RAPD N19a
YI 26.881 CAPS CC02188 CryJUG0521 / CryJUG2774 / Primer BstOI/
kxo 27.580 RFLP CD01317 CryJUG1723 / Scr_kxo/
YI 27.580 RFLP CD00737 CryJUG1186 / YI_HindIII/ Scr_kxo/ Scr_YI/
YI 32.777 RFLP R2 CC01791 CryJUG0933 / YI_HindIII/ Scr_YI/
YI 37.681 SSR CJS0838 Primer Map_Gel Polymorphism
kxo 39.126 RAPD J13a
kxo 41.275 CAPS CC02340 CryJUG0470 / Primer Nat_AluI/
YI 43.869 RFLP CP01488 YI_DraI/
kxo 45.789 CAPS CC02846 CryJUG1485 / CryJUG1897 / Primer DdeI/ Nat_DdeI/
YI 46.027 CAPS CC01263 CryJUG0683 / CC01263F / Primer StyI/
YI 47.661 SSR CJS0091 Primer Map_Gel Polymorphism
YI 47.748 RFLP CP01203 YI_DraI/
YI 49.533 CAPS C1 CC02939 CryJUG0593 / CryJUG0595 / Primer NdeII/ TaqI/ Nat_TaqI/
YI 50.964 CAPS C3 CC02939 CryJUG0593 / CryJUG0595 / Primer NdeII/ TaqI/ Nat_TaqI/
YI 53.670 CAPS CC02921 CryJUG0593 / CryJUG0595 / Primer RsaI/ TaqI/ Nat_TaqI/
YI 56.410 RFLP CD01545 CryJUG1214 / CD01545F / YI_EcoRV/ Scr_kxo/ Scr_YI/
kxo 61.288 RFLP CD01658 CryJUG1844 / Scr_kxo/
YI 62.540 CAPS C2 CC02939 CryJUG0593 / CryJUG0595 / Primer NdeII/ TaqI/ Nat_TaqI/
kxo 63.041 RFLP CD01067 CryJUG1587 / CryJUG1844 / Scr_kxo/ Scr_YI/
kxo 67.544 CAPS CC01244 CryJUG0514 / Primer Nat_HinfI/ Nat_StyI/
kxo 71.161 CAPS CC00300 CryJUG1594 / Primer Nat_BstOI/
YI 79.498 CAPS CC00757 CryJUG0144 / Primer AluI/
kxo 81.786 RFLP CD02036 CryJUG0292 / CryJUG0293 / Scr_kxo/ Scr_YI/
YI 85.476 RFLP CC01524 CryJUG0058 / CryJUG1075 / YI_DraI/ YI_HindIII/ Scr_YI/
kxo 86.227 CAPS CC03816 CC03816F / CC03816R / Primer MspI/ Nat_RsaI/
YI 96.841 CAPS CC02588 CryJUG1549 / CryJUG2413 / Primer Nat_SspI/
YI 121.125 RFLP R2 CC01511 CryJUG1458 / CC01511F / YI_EcoRV/ Scr_YI/










YI8&KO6

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 RFLP CC00300 CryJUG1594 / YI_BglII/ Scr_YI/
YI 15.367 RFLP CC01771 CryJUG1581 / YI_DraI/ Scr_YI/
YI 31.669 CAPS CC03816 CC03816F / CC03816R / Primer MspI/ Nat_RsaI/
YI 43.801 RFLP R1 CC01511 CryJUG1458 / CC01511F / YI_EcoRV/ Scr_YI/
kxo 46.015 CAPS CC00374 CryJUG0065 / CC00374F / Primer Nat_HindIII/ Nat_MspI/
YI 62.034 RFLP CD01613 CryJUG1217 / CD01613F / YI_EcoRV/ Scr_kxo/ Scr_YI/
kxo 64.738 RAPD P12a
YI 67.973 RFLP R3 CC01846 CryJUG0377 / YI_DraI/ Scr_YI/
YI 67.989 RFLP R1 CC01846 CryJUG0377 / YI_DraI/ Scr_YI/
YI 71.424 CAPS CC02333 CryJUG2705 / CC02333R / Primer TaqI/
kxo 77.719 CAPS CC01846 CryJUG0377 / Primer
kxo 79.884 RAPD T11b
kxo 81.558 RFLP CD00485 CryJUG1170 / Scr_kxo/ Scr_YI/
kxo 83.208 CAPS CC01806 CC01806F / Primer MspI/
kxo 84.459 CAPS CC00524 CryJUG0098 / CryJUG2344 / Primer ScrFI/ Nat_BclI/
YI 85.445 RFLP CC01806 CC01806F / YI_DraI/ Scr_YI/
kxo 86.681 RFLP CD01583 CryJUG1691 / CD01583R / Scr_kxo/ Scr_YI/
YI 87.297 RFLP CD00015 CryJUG1576 / YI_HindIII/ Scr_kxo/ Scr_YI/
kxo 91.675 RFLP CD02045 CryJUG0650 / CryJUG2453 / Scr_kxo/ Scr_YI/
YI 92.687 RFLP CP01221 YI_EcoRV/
kxo 92.964 RFLP CD01147 CryJUG1811 / YI_EcoRV/ Scr_kxo/ Scr_YI/
YI 93.389 RFLP CP01190 YI_BglII/
kxo 95.321 RFLP CD01234 CryJUG1235 / CryJUG1722 / Scr_kxo/
kxo 96.257 RFLP CD02043 CryJUG1235 / CryJUG2444 / YI_HindIII/ Scr_kxo/ Scr_YI/
YI 97.632 RFLP CD00491 CryJUG1915 / CD00491F / YI_HaeIII/ Scr_kxo/ Scr_YI/
YI 98.959 RFLP CD01066 CryJUG0306 / CryJUG1193 / YI_EcoRV/ Scr_kxo/ Scr_YI/
YI 100.087 RFLP CC01484 CryJUG0306 / CryJUG1193 / YI_EcoRV/ Scr_YI/
YI 101.767 RFLP CD01237 CryJUG1199 / CD01237R / YI_BglII/ YI_EcoRI/ Scr_kxo/ Scr_YI/
YI 101.787 CAPS C1 CC00797 CryJUG1012 / Primer BstXI/ HhaI/ Nat_HhaI/
YI 102.791 RFLP CD01301 CryJUG1205 / YI_DraI/ Scr_kxo/ Scr_YI/
kxo 103.279 RFLP CD01894 CryJUG1979 / Scr_kxo/ Scr_YI/
YI 105.182 CAPS CC02750 CC02750F / Primer SinI/
kxo 106.310 CAPS CC01135 CryJUG2146 / Primer HhaI/ Nat_Hhal/
YI 108.263 CAPS CC00428 CryJUG1199 / CryJUG2439 / Primer SspI/
kxo 109.287 Other GD3183
YI 111.631 RFLP CC01651 CC01651F / CC01651R / YI_DraI/ Scr_YI/
kxo 121.381 RFLP CD01821 CryJUG1226 / Scr_kxo/ Scr_YI/










YI9&KO3

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 SSR CJG0101 Primer Map_Gel Polymorphism
YI 2.446 RFLP CD02026 CryJUG1091 / YI_HindIII/ Scr_kxo/
YI 7.736 CAPS CC00625 CC00625F / CC00625R / Primer HhaI/ Nat_HhaI/
YI 16.036 RFLP CD01325 CryJUG1207 / YI_EcoRI/ Scr_kxo/ Scr_YI/
YI 16.380 CAPS CC01504 CryJUG0601 / Primer MspI/ Nat_Bst0I/ Nat_MspI/
YI 16.403 CAPS CC02577 CC02577F / CC02577R / Primer DdeI/ Nat_DdeI/
YI 16.410 CAPS CC00796 CryJUG0601 / Primer MspI/ Nat_EcoRV/
YI 16.832 CAPS CC00937 CryJUG0601 / Primer MspI/
YI 18.370 RFLP CC01633 CryJUG0253 / YI_EcoRI/ Scr_YI/
YI 18.727 CAPS CC02081 CryJUG0430 / CryJUG2772 / Primer StyI/
YI 20.994 SSR CJG0177 Primer Map_Gel Polymorphism
YI 30.859 CAPS C1 CC02541 CryJUG0588 / CryJUG2563 / Primer DdeI/ HinfI/
YI 32.411 CAPS CC02700 CryJUG0604 / CC02700F / Primer ALP/ Nat_ALP/ Nat_BanII/
YI 38.929 CAPS C2 CC02541 CryJUG0588 / CryJUG2563 / Primer DdeI/ HinfI/
YI 40.133 CAPS CC02795 CryJUG2787 / Primer DdeI/ Nat_DdeI/
YI 40.157 CAPS CC00285 CC00285F / Primer ScrFI/ Nat_NciI/
YI 40.246 RFLP CC01670 CryJUG0854 / YI_HindIII/ Scr_YI/
kxo 40.585 RFLP CD01769 CryJUG1224 / Scr_kxo/ Scr_YI/
YI 42.855 RFLP CC01874 CryJUG0346 / YI_HindIII/ Scr_YI/
kxo 44.358 CAPS CC02676 CryJUG0542 / Primer
YI 44.455 CAPS CD00482 CryJUG1169 / Primer EcoT38I/ Nat_BanII/
kxo 45.676 RFLP CD00482 CryJUG1169 / Scr_kxo/ Scr_YI/
YI 45.810 RFLP CC01604 CryJUG1505 / CryJUG2533 / YI_EcoRI/ Scr_YI/
kxo 49.667 RAPD S10c
YI 62.263 RFLP R2 CD01126 CryJUG1216 / YI_EcoRI/ Scr_kxo/ Scr_YI/
YI 72.238 RFLP R1 CD01126 CryJUG1216 / YI_EcoRI/ Scr_kxo/ Scr_YI/










YI10&KO10

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 RFLP CP01346 YI_EcoRI/
kxo 11.907 RFLP CD01608 CD01608F / CD01608R / YI_DraI/ Scr_kxo/ Scr_YI/
kxo 16.182 CAPS CC01298 CryJUG0267 / CryJUG2699 / Primer Nat_RsaI/
kxo 16.239 Other GD3325
kxo 16.239 RFLP CD00177 Scr_kxo/ Scr_YI/
YI 16.798 RFLP CD00811 CryJUG1188 / YI_HaeIII/ Scr_kxo/ Scr_YI/
YI 24.327 SSR CJS0356 Primer Map_Gel Polymorphism
kxo 29.408 CAPS CC02702 CryJUG0912 / Primer Nat_RsaI/
kxo 29.493 CAPS CC02631 CC02631F / CC02631R / Primer Nat_HhaI/
YI 30.240 SSR CJS0455 Primer Map_Gel Polymorphism
YI 30.800 CAPS CC00337 CryJUG0005 / Primer EcoT38I/
YI 41.155 SSR CS2484 Primer Map_Gel Polymorphism
YI 43.134 CAPS CC01774 CC01774F / CC01774R / Primer ScrFI/ Nat_Bst0I/ Nat_ScrFI/
YI 45.165 RFLP CC01774 CC01774F / CC01774R / YI_BglII/ Scr_YI/
kxo 51.034 RFLP CD02055 CryJUG1670 / Scr_kxo/
YI 55.345 RFLP R1 CP01194 YI_HindIII/
kxo 57.195 Other Lap
kxo 60.996 RFLP CD00470 CryJUG0202 / Scr_kxo/
kxo 61.025 CAPS CC00747 CryJUG0202 / Primer Nat_SalI/
kxo 61.054 CAPS CD00470 CryJUG0202 / Primer Nat_BglII/
YI 62.357 CAPS CC00546 CryJUG0103 / Primer MspI/ Nat_MspI/
kxo 62.955 CAPS CC02683 CryJUG0543 / Primer Nat_HaeIII/
kxo 63.015 RFLP CD01831 CryJUG1228 / Scr_kxo/ Scr_YI/
YI 66.298 RFLP CC01485 CC01485F / YI_EcoRI/ Scr_YI/
YI 69.115 RFLP CP01230 YI_EcoRV/
YI 69.627 CAPS CC01689 CryJUG0342 / Primer HinfI/ Nat_HaeIII/
YI 71.984 CAPS C2 CC02746 CC02746F / CC02746R / Primer DdeI/ RsaI/ Nat_DdeI/
kxo 72.573 CAPS CC01112 CryJUG0206 / Primer Nat_BglII/
kxo 72.602 CAPS CC00924 CryJUG0299 / Primer Nat_StyI/
YI 74.971 CAPS CC03823 CryJUG2096 / CC03823F / Primer HinfI/
kxo 76.605 RFLP CD01425 CryJUG1208 / Scr_kxo/
YI 76.883 CAPS CC01147 CryJUG0932 / Primer RsaI/
YI 77.794 RFLP CD00414 CryJUG1515 / YI_BglII/ Scr_kxo/ Scr_YI/
kxo 78.063 RFLP CD01747 CryJUG1223 / YI_EcoRV/ Scr_kxo/ Scr_YI/
YI 78.916 SSR CJS0485 Primer Map_Gel Polymorphism
YI 79.588 RFLP Cryj3.5
YI 80.967 RFLP CC01601 CryJUG0321 / YI_EcoRI/ Scr_YI/
YI 81.131 RFLP CD01747 CryJUG1223 / YI_EcoRV/ Scr_kxo/ Scr_YI/
kxo 82.070 RFLP CD00742 CryJUG1928 / CD00742R / Scr_kxo/
YI 85.433 RFLP CD01195 CryJUG1339 / CD01195R / YI_EcoRV/ Scr_kxo/ Scr_YI/
YI 92.301 CAPS C1 CC00787 CryJUG0056 / CryJUG0057 / Primer AseI/
YI 95.149 CAPS C2 CC01629 CryJUG0327 / CryJUG2045 / Primer HincII/
kxo 96.196 CAPS CC02716 CryJUG0547 / CC02716F / Primer Nat_AluI/
YI 97.639 RFLP CC01629 CryJUG0327 / CryJUG2045 / YI_DraI/ Scr_YI/
YI 105.209 CAPS CC00551 CryJUG0106 / CryJUG0712 / Primer HindIII/
YI 110.249 RFLP CC01787 CryJUG2753 / CC01787R / YI_DraI/ Scr_YI/
YI 110.426 RFLP CD02043 CryJUG1235 / CryJUG2444 / YI_HindIII/ Scr_kxo/ Scr_YI/
YI 117.175 CAPS CC02909 CryJUG0591 / Primer AluI/
kxo 118.600 RFLP CD00776 CD00776F / CD00776R / Scr_kxo/
kxo 120.026 RFLP CD00737 CryJUG1186 / YI_HindIII/ Scr_kxo/ Scr_YI/
YI 121.116 RFLP CC01476 CryJUG1332 / CC01476F / YI_EcoRI/ Scr_YI/
kxo 123.118 CAPS CC03393 CryJUG1352 / CryJUG2112 / Primer SspI/ Nat_HinfI/
kxo 126.941 Other GD3054
YI 129.007 RFLP R2 CC01681 CryJUG0340 / YI_BglII/ Scr_YI/
YI 129.393 RFLP R1 CC01681 CryJUG0340 / YI_BglII/ Scr_YI/
YI 135.377 RFLP CC01786 CC01786F / YI_BglII/ Scr_YI/
YI 138.031 CAPS C1 CC00539 CryJUG0101 / Primer HaeIII/ Nat_HaeIII/
YI 139.889 CAPS C2 CC00539 CryJUG0101 / Primer HaeIII/ Nat_HaeIII/










YI11&KO9

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
YI 0.000 RFLP CC01720 CryJUG2443 / YI_BglII/ YI_DraI/ Scr_YI/
kxo 6.296 CAPS CC00803 CryJUG0723 / Primer ALP/ HaeIII/ Nat_HaeIII/
YI 7.504 CAPS CC02377 CryJUG0478 / Primer HaeIII/
kxo 7.858 CAPS CC00590 CryJUG0111 / Primer Nat_XhoI/
YI 10.061 CAPS CC00731 CryJUG2793 / Primer HhaI/ Nat_HinfI/
YI 10.072 CAPS C1 CC00803 CryJUG0723 / Primer ALP/ HaeIII/ Nat_HaeIII/
YI 10.220 CAPS CC01172 CryJUG0723 / Primer HhaI/ Nat_HhaI/
kxo 13.494 RFLP CD01937 YI_DraI/ Scr_YI/
YI 13.733 CAPS CC02643 CryJUG1353 / CC02643F / Primer MspI/
kxo 14.457 RFLP CD01569 CryJUG2443 / Scr_kxo/
kxo 15.647 RAPD R02b
kxo 18.171 RFLP CD01249 CryJUG1200 / Scr_kxo/
kxo 20.551 RAPD G05b
YI 25.730 CAPS CC01015 CryJUG0027 / Primer SpeI/ Nat_HhaI/
YI 27.158 CAPS CC01204 CryJUG0027 / Primer SpeI/ Nat_RsaI/ Nat_SpeI/
YI 28.250 SSR CS1226 Primer Map_Gel Polymorphism
kxo 31.840 RFLP CD00523 CryJUG3217 / Scr_kxo/
YI 33.187 CAPS C2 CD01179 CryJUG0013 / CryJUG1198 / Primer EcoRI/ Nat_AluI/ Nat_EcoRI/
YI 33.530 CAPS CD02035 CryJUG0137 / CryJUG0160 / Primer RsaI/
YI 34.218 CAPS CD00526 CryJUG0137 / CryJUG0160 / Primer RsaI/ Nat_RsaI/
YI 34.257 CAPS CC00719 CryJUG0137 / CryJUG0160 / Primer HinfI/ Nat_AluI/
YI 34.281 CAPS CC00858 CryJUG0137 / CryJUG0160 / Primer HinfI/ Nat_AluI/
kxo 34.573 RFLP CD02035 CryJUG0137 / CryJUG0160 / Scr_kxo/ Scr_YI/
kxo 34.956 CAPS C1 CD01179 CryJUG0013 / CryJUG1198 / Primer EcoRI/ Nat_AluI/ Nat_EcoRI/
kxo 35.734 RFLP CD00526 CryJUG0137 / CryJUG0160 / Scr_kxo/
kxo 43.902 CAPS CC01395 CryJUG0295 / CryJUG0569 / Primer
YI 51.336 RFLP CD00569 YI_DraI/ Scr_kxo/ Scr_YI/
YI 53.118 RFLP CP01268 YI_EcoRV/
YI 56.156 SSR CS2056 Primer Map_Gel Polymorphism
YI 58.966 SSR CS1522 Primer Map_Gel Polymorphism
YI 68.744 CAPS CC01148 CryJUG0122 / Primer MspI/
YI 70.779 CAPS CC02448 CC02448F / CC02448R / Primer HhaI/ RsaI/
kxo 72.769 CAPS CC02946 CryJUG0960 / Primer
kxo 74.989 CAPS CD01706 CryJUG1220 / Primer Nat_HhaI/
kxo 77.939 RFLP CD00620 CryJUG1181 / Scr_kxo/
YI 78.364 RFLP CD00657 CryJUG1183 / YI_DraI/ Scr_kxo/ Scr_YI/
YI 79.503 RFLP CC01483 CryJUG1329 / YI_HindIII/ Scr_YI/
kxo 80.369 RFLP CD00167 CryJUG0359 / CD00167F / Scr_kxo/
kxo 82.215 RAPD B12a
kxo 85.582 RAPD B17a
kxo 87.958 RFLP CD00131 CryJUG1156 / YI_HaeIII/ Scr_YI/
YI 90.326 SSR CJG0193 Primer Map_Gel Polymorphism
kxo 90.568 RFLP CD01232 CryJUG0969 / Scr_kxo/ Scr_YI/
YI 93.133 RFLP CC01637 CC01637F / CC01637R / YI_HindIII/ Scr_YI/
kxo 96.084 CAPS CC00501 CryJUG1615 / Primer
kxo 96.096 CAPS CC00343 CryJUG1474 / Primer Nat_HhaI/
YI 98.267 CAPS CC00482 CryJUG0959 / Primer ALP/ Nat_ALP/










YI12&KO8

Pedigrees Positions Markers Copies Loci UNIGENE Primers Mapping Polymorphism
kxo 0.000 RFLP CD01943 CryJUG1231 / Scr_kxo/ Scr_YI/
kxo 0.407 RFLP CD01824 CD01824F / CD01824R / Scr_kxo/
YI 4.260 RFLP CC01652 CC01652F / CC01652R / YI_BglII/ Scr_YI/
YI 12.705 RFLP CD00630 CryJUG1394 / YI_HindIII/ Scr_kxo/ Scr_YI/
kxo 17.973 RAPD N14a
YI 20.594 SSR CJG0123 Primer Map_Gel Polymorphism
kxo 21.796 RFLP CD00588 Scr_kxo/ Scr_YI/
YI 25.527 CAPS CC02435 CryJUG0488 / CryJUG1386 / Primer HaeIII/ RsaI/
kxo 25.577 CAPS CC02621 CryJUG0529 / CC02621F / Primer HaeIII/ Nat_HaeIII/
kxo 26.588 RAPD I02b
kxo 27.408 RFLP CD00025 Scr_kxo/ Scr_YI/
YI 29.806 CAPS CC00718 CryJUG0309 / CryJUG0586 / Primer HinfI/ Nat_AluI/
YI 29.868 CAPS CC00541 CryJUG0102 / Primer EcoT38I/
YI 31.147 CAPS CC01497 CryJUG0309 / CryJUG0586 / Primer ScrFI/
kxo 49.797 RAPD R07a