LG9
A partial linkage map around the ms1 locus for C. japonica, derived from the TO-S pedigree.
| Locus | Position | distance |
| CJG0101S | 0 | |
| ssSNP_005_sf | 1.636 | 1.636 |
| gSNP02475 | 2.522 | 0.886 |
| gSNP03241 | 2.605 | 0.083 |
| gSNP00834 | 5.931 | 3.326 |
| gSNP03665 | 5.931 | 0 |
| gSNP01224 | 5.931 | 0 |
| CC0937C | 9.979 | 4.048 |
| CC1504C | 10.058 | 0.079 |
| CC796R_sf | 13.316 | 3.258 |
| gSNP03303 | 19.58 | 6.264 |
| CC0625F_sf | 21.572 | 1.992 |
| hrmSNP970_sf | 24.585 | 3.013 |
| ms1 | 25.146 | 0.561 |
| gSNP01452 | 26.137 | 0.991 |
| gSNP00438 | 26.801 | 0.664 |
| gSNP03800 | 32.031 | 5.23 |
| CC1633_sf | 34.629 | 2.598 |
| gSNP03589 | 38.295 | 3.666 |
| gSNP00062 | 40.195 | 1.9 |
| hrmSNP_s16 | 40.219 | 0.024 |
| hrmSNP_s798 | 40.479 | 0.26 |
| gSNP02267 | 40.509 | 0.03 |
| gSNP03401 | 40.509 | 0 |
| gSNP0661 | 40.509 | 0 |
| gSNP05175 | 41.013 | 0.504 |
| CJG0177_S | 41.355 | 0.342 |
| gSNP04584 | 41.867 | 0.512 |
| CC2081F_sf | 44.969 | 3.102 |
| meaSNP_007_sf | 46.259 | 1.29 |
| gSNP00430 | 53.714 | 7.455 |
| gSNP04062 | 58.76 | 5.046 |
| gSNP01315 | 64.708 | 5.948 |
| gSNP05193 | 79.54 | 14.832 |
| gSNP04250 | 80.626 | 1.086 |
| gSNP00581 | 83.429 | 2.803 |
| gSNP05038 | 84.039 | 0.61 |
| gSNP03644 | 87.702 | 3.663 |
| gSNP02854 | 88.389 | 0.687 |
| gSNP03153 | 88.63 | 0.241 |
| CC0285C | 92.086 | 3.456 |
| CC2676C | 96.232 | 4.146 |
| ssSNP_013_sf | 104.545 | 8.313 |