LG1
| Locus | Position | distance |
| CC1802R | 0 | |
| hrmSNP_s0796 | 1.423 | 1.423 |
| hrmSNP_s0336 | 2.829 | 1.406 |
| CC0911R | 4.373 | 1.544 |
| gSNP02187 | 5.03 | 0.657 |
| gSNP03841 | 5.518 | 0.488 |
| gSNP01517 | 5.518 | 0 |
| gSNP00585 | 5.518 | 0 |
| gSNP01279 | 6.494 | 0.976 |
| gSNP05180 | 7.325 | 0.831 |
| gSNP02582 | 7.401 | 0.076 |
| gSNP02363 | 8.092 | 0.691 |
| gSNP05156 | 8.423 | 0.331 |
| gSNP03782 | 8.429 | 0.006 |
| gSNP01730 | 8.429 | 0 |
| gSNP00361 | 8.429 | 0 |
| gSNP04482 | 8.98 | 0.551 |
| gSNP00344 | 11.299 | 2.319 |
| gSNP04895 | 19.529 | 8.23 |
| gSNP03511 | 20.339 | 0.81 |
| hrmSNP_s0080 | 20.988 | 0.649 |
| CC1747R | 22.128 | 1.14 |
| gSNP05048 | 23.3 | 1.172 |
| gSNP02472 | 23.302 | 0.002 |
| ssSNP_001 | 25.249 | 1.947 |
| Chi1_2site1_s | 28.062 | 2.813 |
| CC0616C | 28.207 | 0.145 |
| Chi1_3_s | 28.591 | 0.384 |
| gSNP03549 | 28.923 | 0.332 |
| CC0411C | 29.499 | 0.576 |
| Chi1_2site2_s | 29.569 | 0.07 |
| gSNP02764 | 32.315 | 2.746 |
| CC0787C2 | 32.549 | 0.234 |
| CD0633R | 33.105 | 0.556 |
| gSNP04881 | 33.484 | 0.379 |
| gSNP04802 | 33.609 | 0.125 |
| gSNP04134 | 34.526 | 0.917 |
| CS2169S | 38.506 | 3.98 |
| CP1510R | 38.722 | 0.216 |
| hrmSNP_c182 | 40.563 | 1.841 |
| gSNP02563 | 41.494 | 0.931 |
| CC1704C | 41.859 | 0.365 |
| gSNP00381 | 42.154 | 0.295 |
| hrmSNP_s0664 | 42.379 | 0.225 |
| gSNP05328 | 43.079 | 0.7 |
| gSNP03239 | 44.529 | 1.45 |
| gSNP00595 | 44.807 | 0.278 |
| CC3330R | 45.182 | 0.375 |
| hrmSNP_s4035 | 46.73 | 1.548 |
| CC3872C | 50.231 | 3.501 |
| gSNP02177 | 52.484 | 2.253 |
| CC1724R | 53.12 | 0.636 |
| ssSNP_031 | 53.205 | 0.085 |
| hrmSNP_c193 | 54.713 | 1.508 |
| gSNP05415 | 56.109 | 1.396 |
| gSNP00068 | 56.877 | 0.768 |
| gSNP04496 | 57.54 | 0.663 |
| gSNP05037 | 58.75 | 1.21 |
| gSNP01833 | 58.75 | 0 |
| gSNP03033 | 58.754 | 0.004 |
| gSNP04667 | 58.764 | 0.01 |
| gSNP01122 | 59.469 | 0.705 |
| gSNP01491 | 60.715 | 1.246 |
| gSNP05433 | 61.336 | 0.621 |
| gSNP02551 | 62.739 | 1.403 |
| CC2895C | 63.241 | 0.502 |
| CC1698C | 64.468 | 1.227 |
| gSNP03819 | 65.916 | 1.448 |
| gSNP01749 | 68.651 | 2.735 |
| hrmSNP_s0501 | 72.145 | 3.494 |
| CJG0175_S | 72.468 | 0.323 |
| CS1413S | 77.448 | 4.98 |
| gSNP01353 | 78.238 | 0.79 |
| hrmSNP_c037 | 82.395 | 4.157 |
| gSNP00594 | 83.622 | 1.227 |
| CC3367C | 83.864 | 0.242 |
| gSNP02797 | 84.39 | 0.526 |
| gSNP03089 | 85.368 | 0.978 |
| CC0864C1 | 88.843 | 3.475 |
| gSNP01812 | 89.21 | 0.367 |
| CC1748R | 90.07 | 0.86 |
| gSNP05603 | 91.503 | 1.433 |
| gSNP01574 | 91.719 | 0.216 |
| CC1674R1 | 92.365 | 0.646 |
| CC0864C2 | 93.538 | 1.173 |
| CC2123C | 94.256 | 0.718 |
| gSNP03242 | 94.394 | 0.138 |
| hrmSNP_s1043 | 95.335 | 0.941 |
| gSNP05223 | 95.409 | 0.074 |
| gSNP03789 | 96.697 | 1.288 |
| gSNP05228 | 96.928 | 0.231 |
| gSNP03987 | 97.194 | 0.266 |
| gSNP01317 | 97.304 | 0.11 |
| gSNP01230 | 97.494 | 0.19 |
| gSNP01530 | 101.44 | 3.946 |
| CC1825R | 103.484 | 2.044 |
| hrmSNP_s0994 | 104.359 | 0.875 |
| gSNP01191 | 105.032 | 0.673 |
| LycB_s | 105.396 | 0.364 |
| CD0423R | 107.325 | 1.929 |
| gSNP02297 | 109.23 | 1.905 |
| gSNP02235 | 111.009 | 1.779 |
| gSNP01410 | 111.339 | 0.33 |
| gSNP02967 | 111.912 | 0.573 |
| gSNP01529 | 112.458 | 0.546 |
| gSNP02773 | 113.257 | 0.799 |
| gSNP02633 | 114.952 | 1.695 |
| CP1076R | 114.952 | 0 |
| gSNP02567 | 116.503 | 1.551 |
| CP1145R | 119.76 | 3.257 |
| CP1286R | 131.552 | 11.792 |