LG2
| Locus | Position | distance |
| gSNP04421 | 0 | |
| gSNP02694 | 0.053 | 0.053 |
| gSNP04565 | 0.053 | 0 |
| gSNP01509 | 0.711 | 0.658 |
| gSNP04896 | 1.232 | 0.521 |
| hrmSNP_s0681 | 2.082 | 0.85 |
| gSNP03347 | 2.297 | 0.215 |
| CMFL026-M15F_ES | 2.928 | 0.631 |
| CC2657C | 2.966 | 0.038 |
| hrmSNP_s0372 | 4.241 | 1.275 |
| gSNP01953 | 4.404 | 0.163 |
| gSNP04222 | 4.905 | 0.501 |
| hrmSNP_s0340 | 4.948 | 0.043 |
| gSNP00831 | 5.808 | 0.86 |
| hrmSNP_s0679 | 5.826 | 0.018 |
| gSNP01198_291 | 6.382 | 0.556 |
| CD0517R | 6.597 | 0.215 |
| gSNP04192 | 6.837 | 0.24 |
| CMFL044-I17F_ES | 7.013 | 0.176 |
| CC2467C | 7.436 | 0.423 |
| hrmSNP_s0509 | 7.562 | 0.126 |
| CC1488R2 | 7.75 | 0.188 |
| gSNP05044 | 8.487 | 0.737 |
| gSNP00099 | 9.221 | 0.734 |
| gSNP04730 | 9.221 | 0 |
| gSNP05432 | 9.221 | 0 |
| gSNP05563 | 9.487 | 0.266 |
| hrmSNP_s0756 | 11.667 | 2.18 |
| gSNP04461 | 12.603 | 0.936 |
| gSNP03849 | 12.869 | 0.266 |
| CMFL045-G05F_ES | 13.642 | 0.773 |
| gSNP02721 | 14.236 | 0.594 |
| gSNP04266 | 14.949 | 0.713 |
| meaSNP_014 | 15.662 | 0.713 |
| gSNP03788 | 15.699 | 0.037 |
| Cryj2C | 19.072 | 3.373 |
| gSNP04244 | 25.484 | 6.412 |
| gSNP02183 | 27.382 | 1.898 |
| gSNP05075 | 31.921 | 4.539 |
| gSNP01316 | 34.393 | 2.472 |
| gSNP02220 | 36.329 | 1.936 |
| CC1632R | 38.386 | 2.057 |
| ssSNP_023 | 40.239 | 1.853 |
| CC0432C | 40.835 | 0.596 |
| gSNP00597 | 41.89 | 1.055 |
| CC0707C | 45.362 | 3.472 |
| CC1912R | 47.402 | 2.04 |
| gSNP02408 | 47.867 | 0.465 |
| gSNP0250 | 51.216 | 3.349 |
| hrmSNP_s0031 | 53.381 | 2.165 |
| hrmSNP_s0289 | 53.68 | 0.299 |
| gSNP00682 | 56.163 | 2.483 |
| hrmSNP_s0307 | 56.882 | 0.719 |
| CC0390C | 57.183 | 0.301 |
| gSNP02371 | 57.636 | 0.453 |
| gSNP05123 | 57.925 | 0.289 |
| gSNP04589 | 57.925 | 0 |
| gSNP02495 | 57.934 | 0.009 |
| gSNP00066 | 57.953 | 0.019 |
| hrmSNP_s0799 | 58.109 | 0.156 |
| gSNP03082 | 59.151 | 1.042 |
| gSNP04111 | 59.264 | 0.113 |
| gSNP00114 | 59.362 | 0.098 |
| gSNP04966 | 59.632 | 0.27 |
| gSNP05113 | 59.642 | 0.01 |
| gSNP01098 | 59.908 | 0.266 |
| gSNP05191 | 59.933 | 0.025 |
| gSNP03911 | 59.965 | 0.032 |
| gSNP01375 | 60.305 | 0.34 |
| gSNP01950 | 60.661 | 0.356 |
| CC2583C | 61.027 | 0.366 |
| gSNP03206 | 61.345 | 0.318 |
| gSNP03243 | 61.627 | 0.282 |
| gSNP04700 | 63.283 | 1.656 |
| hrmSNP_s0262 | 63.898 | 0.615 |
| hrmSNP_s0645 | 64.822 | 0.924 |
| hrmSNP_s0327 | 65.56 | 0.738 |
| CC1490R | 66.557 | 0.997 |
| gSNP02031 | 68.095 | 1.538 |
| gSNP02882 | 70.408 | 2.313 |
| gSNP04572 | 72.768 | 2.36 |
| gSNP00885 | 72.768 | 0 |
| gSNP03626 | 76.869 | 4.101 |
| gSNP01311 | 79.099 | 2.23 |
| gSNP05357 | 79.099 | 0 |
| CC1831R | 79.914 | 0.815 |
| CC0734C | 80.982 | 1.068 |
| gSNP05259 | 82.331 | 1.349 |
| hrmSNP_s0024 | 83.528 | 1.197 |
| gSNP01874 | 85.069 | 1.541 |
| gSNP01499 | 85.688 | 0.619 |
| CD1875C | 86.157 | 0.469 |
| CC1125C | 86.509 | 0.352 |
| gSNP02811 | 87.085 | 0.576 |
| gSNP01708 | 88.524 | 1.439 |
| CC3416C | 90.128 | 1.604 |
| CC0493C | 90.908 | 0.78 |
| gSNP04819 | 91.665 | 0.757 |
| gSNP05059 | 91.676 | 0.011 |
| CS1737S | 92.825 | 1.149 |
| gSNP00505 | 93.31 | 0.485 |
| hrmSNP_s0378 | 95.414 | 2.104 |
| gSNP03632 | 96.163 | 0.749 |
| ssSNP_035 | 98.187 | 2.024 |
| gSNP04859 | 98.816 | 0.629 |
| gSNP04411 | 98.822 | 0.006 |
| gSNP01871 | 98.83 | 0.008 |
| gSNP00686 | 98.83 | 0 |
| CC1876C | 100.522 | 1.692 |
| hrmSNP_s0680 | 102.477 | 1.955 |
| CC0342C | 103.768 | 1.291 |
| gSNP03509 | 104.566 | 0.798 |
| gSNP01294 | 107.993 | 3.427 |
| gSNP01392 | 107.993 | 0 |