LG4
| Locus | Position | distance |
| CJS333_S | 0 | |
| gSNP02488 | 0.999 | 0.999 |
| gSNP04822 | 1.295 | 0.296 |
| gSNP01170 | 3.555 | 2.26 |
| CC0980C | 4.711 | 1.156 |
| CC1402C | 5.051 | 0.34 |
| ssSNP_021 | 8.252 | 3.201 |
| CC1319C | 8.639 | 0.387 |
| CC0622C | 9.738 | 1.099 |
| CC0404C | 10.249 | 0.511 |
| gSNP05257 | 13.047 | 2.798 |
| hrmSNP_s0447 | 14.242 | 1.195 |
| CC0421C | 14.265 | 0.023 |
| gSNP04268 | 15.618 | 1.353 |
| gSNP03065 | 15.627 | 0.009 |
| gSNP02084 | 15.627 | 0 |
| gSNP00502 | 15.792 | 0.165 |
| gSNP03222 | 16.494 | 0.702 |
| gSNP03535 | 16.52 | 0.026 |
| gSNP03304 | 17.046 | 0.526 |
| gSNP01152 | 17.132 | 0.086 |
| hrmSNP_s0752 | 17.784 | 0.652 |
| gSNP00044 | 19.155 | 1.371 |
| CC2752C | 21.802 | 2.647 |
| gSNP05258 | 27.168 | 5.366 |
| gSNP03992 | 27.483 | 0.315 |
| CC1505R1 | 28.771 | 1.288 |
| CC0344C | 31.214 | 2.443 |
| gSNP01172_202 | 31.282 | 0.068 |
| gSNP05030 | 31.535 | 0.253 |
| gSNP02159 | 32 | 0.465 |
| hrmSNP_c273 | 34.957 | 2.957 |
| gSNP04847 | 39.027 | 4.07 |
| CC1664R | 41.915 | 2.888 |
| gSNP01166 | 43.247 | 1.332 |
| CP1262R1 | 44.592 | 1.345 |
| gSNP01431 | 44.7 | 0.108 |
| CP1379R | 45.536 | 0.836 |
| gSNP01548 | 47.552 | 2.016 |
| gSNP01705 | 47.705 | 0.153 |
| gSNP02365 | 48.545 | 0.84 |
| CC1479R | 49.909 | 1.364 |
| gSNP04145 | 49.916 | 0.007 |
| gSNP03734 | 49.955 | 0.039 |
| gSNP04615 | 49.955 | 0 |
| CMFL012-M07R_ES | 53.006 | 3.051 |
| hrmSNP_s0807 | 56.069 | 3.063 |
| gSNP01898 | 57.238 | 1.169 |
| CC1650R1 | 58.776 | 1.538 |
| CC3098C4 | 59.94 | 1.164 |
| CC3098C3 | 60.296 | 0.356 |
| CC3098C2 | 60.433 | 0.137 |
| gSNP02644 | 61.187 | 0.754 |
| gSNP00967 | 61.424 | 0.237 |
| gSNP00213 | 62.012 | 0.588 |
| gSNP05303 | 62.012 | 0 |
| gSNP04871 | 62.292 | 0.28 |
| gSNP04809 | 62.869 | 0.577 |
| hrmSNP_s0295 | 63.45 | 0.581 |
| gSNP04728 | 63.618 | 0.168 |
| gSNP00341 | 63.739 | 0.121 |
| gSNP00069 | 64.231 | 0.492 |
| gSNP01155 | 64.446 | 0.215 |
| gSNP03186 | 64.504 | 0.058 |
| CC1721C | 65.053 | 0.549 |
| CJG121_S | 65.304 | 0.251 |
| hrmSNP_s0475 | 71.648 | 6.344 |
| ssSNP_033 | 71.755 | 0.107 |
| gSNP00586 | 72.597 | 0.842 |
| hrmSNP_s0783 | 74.655 | 2.058 |
| ssSNP_022 | 75.181 | 0.526 |
| gSNP02777 | 75.702 | 0.521 |
| gSNP04153 | 76.381 | 0.679 |
| gSNP01024 | 78.306 | 1.925 |
| gSNP00060 | 78.31 | 0.004 |
| gSNP00058_119 | 79.558 | 1.248 |
| gSNP00943 | 79.629 | 0.071 |
| hrmSNP_s0793 | 81.449 | 1.82 |
| gSNP04659 | 82.443 | 0.994 |
| gSNP01939 | 84.589 | 2.146 |
| gSNP00518 | 85.381 | 0.792 |
| gSNP01437 | 86.281 | 0.9 |
| gSNP03098 | 86.672 | 0.391 |
| gSNP00158 | 89.403 | 2.731 |
| gSNP02135 | 89.629 | 0.226 |
| gSNP02680 | 91.497 | 1.868 |
| gSNP01799 | 92.021 | 0.524 |
| BJ939490_ES | 93.623 | 1.602 |
| gSNP02766 | 94.967 | 1.344 |
| hrmSNP_s0227 | 96.49 | 1.523 |
| gSNP03259 | 96.928 | 0.438 |
| gSNP01911 | 97.733 | 0.805 |
| gSNP03274 | 99.933 | 2.2 |
| gSNP02184 | 100.609 | 0.676 |
| CC1652R | 102.005 | 1.396 |
| gSNP03637 | 102.873 | 0.868 |
| gSNP04550 | 103.913 | 1.04 |
| gSNP02799 | 104.133 | 0.22 |
| CD0630R | 105.225 | 1.092 |
| gSNP01447 | 105.996 | 0.771 |
| gSNP05552 | 106.253 | 0.257 |
| gSNP01634 | 107.915 | 1.662 |
| gSNP03844 | 108.493 | 0.578 |
| gSNP03007 | 109.446 | 0.953 |
| gSNP02324 | 110.76 | 1.314 |
| gSNP05405 | 111.317 | 0.557 |
| gSNP04410 | 111.589 | 0.272 |
| CJG0123S | 111.649 | 0.06 |
| gSNP03515 | 112.286 | 0.637 |
| gSNP01963 | 114.012 | 1.726 |
| meaSNP_002 | 116.347 | 2.335 |
| hrmSNP_s0859 | 117.954 | 1.607 |
| gSNP02165 | 118.364 | 0.41 |
| gSNP04904 | 119.256 | 0.892 |
| CC0541C | 119.708 | 0.452 |
| CC2435C | 120.616 | 0.908 |
| gSNP02630 | 121.148 | 0.532 |
| gSNP02375 | 121.148 | 0 |
| CC1497C | 124.884 | 3.736 |
| CC0718C | 125.664 | 0.78 |