LG2
| Locus | Position | Distance |
| estSNP01335 | 0 | 0 |
| gSNP02694 | 0.389 | 0.389 |
| gSNP04421 | 0.389 | 0 |
| gSNP04565 | 0.389 | 0 |
| estSNP03831 | 0.389 | 0 |
| estSNP01329 | 0.389 | 0 |
| gSNP01509 | 1.042 | 0.653 |
| estSNP05300 | 1.076 | 0.034 |
| gSNP04896 | 1.71 | 0.634 |
| gSNP11847 | 1.71 | 0 |
| estSNP02490 | 2.232 | 0.522 |
| estSNP04411 | 2.348 | 0.116 |
| estSNP04324 | 2.436 | 0.088 |
| gSNP03347 | 3.988 | 1.552 |
| gSNP01953 | 4.437 | 0.449 |
| estSNP04396 | 4.437 | 0 |
| estSNP00552 | 4.437 | 0 |
| estSNP03027 | 5.162 | 0.725 |
| gSNP08035 | 5.981 | 0.819 |
| gSNP04192 | 6.61 | 0.629 |
| estSNP03434 | 7.522 | 0.912 |
| BY893784_ES | 7.779 | 0.257 |
| gSNP01198_291 | 7.926 | 0.147 |
| gSNP07727 | 7.926 | 0 |
| gSNP11943 | 8.129 | 0.203 |
| gSNP05563 | 8.34 | 0.211 |
| estSNP04811 | 8.596 | 0.256 |
| estSNP04813 | 8.596 | 0 |
| gSNP11781 | 8.629 | 0.033 |
| estSNP03811 | 8.836 | 0.207 |
| estSNP04728 | 9.212 | 0.376 |
| gSNP05044 | 9.265 | 0.053 |
| estSNP05096 | 9.868 | 0.603 |
| gSNP00099 | 9.872 | 0.004 |
| gSNP04730 | 9.872 | 0 |
| gSNP05432 | 9.872 | 0 |
| estSNP05184 | 9.872 | 0 |
| gSNP07642 | 9.872 | 0 |
| gSNP08500 | 9.872 | 0 |
| estSNP04459 | 9.872 | 0 |
| estSNP01227 | 9.875 | 0.003 |
| gSNP07382 | 10.495 | 0.62 |
| estSNP03011 | 10.573 | 0.078 |
| estSNP04911 | 10.627 | 0.054 |
| estSNP02020 | 11.263 | 0.636 |
| estSNP05315 | 11.316 | 0.053 |
| estSNP04272 | 11.365 | 0.049 |
| estSNP00854 | 11.365 | 0 |
| estSNP02509 | 11.787 | 0.422 |
| estSNP01471 | 11.826 | 0.039 |
| estSNP04593 | 12.287 | 0.461 |
| estSNP01241 | 12.669 | 0.382 |
| gSNP02721 | 13.206 | 0.537 |
| gSNP03788 | 14.487 | 1.281 |
| BY894091_ES | 14.57 | 0.083 |
| estSNP03450 | 15.033 | 0.463 |
| gSNP04266 | 15.415 | 0.382 |
| estSNP01804 | 15.445 | 0.03 |
| estSNP03540 | 15.595 | 0.15 |
| CryJ2_BACsnp | 16.937 | 1.342 |
| estSNP00058 | 17.769 | 0.832 |
| gSNP08808 | 18.291 | 0.522 |
| gSNP09691 | 19.57 | 1.279 |
| gSNP06599 | 19.57 | 0 |
| estSNP03102 | 22.998 | 3.428 |
| gSNP07905 | 42.873 | 19.875 |
| estSNP04583 | 44.175 | 1.302 |
| estSNP04537 | 45.788 | 1.613 |
| gSNP05437 | 46.013 | 0.225 |
| gSNP00250 | 47.229 | 1.216 |
| gSNP08492 | 47.229 | 0 |
| estSNP00794 | 48.246 | 1.017 |
| gSNP09263 | 52.386 | 4.14 |
| estSNP05289 | 52.433 | 0.047 |
| estSNP05080 | 54.287 | 1.854 |
| estSNP03044 | 54.672 | 0.385 |
| estSNP02792 | 54.906 | 0.234 |
| gSNP03082 | 54.909 | 0.003 |
| estSNP02390 | 54.91 | 0.001 |
| estSNP05772 | 54.914 | 0.004 |
| estSNP04344 | 54.914 | 0 |
| estSNP00649 | 55.068 | 0.154 |
| BY895203_ES | 55.259 | 0.191 |
| estSNP01114 | 55.409 | 0.15 |
| estSNP02061 | 55.461 | 0.052 |
| gSNP04966 | 55.464 | 0.003 |
| estSNP02046 | 55.482 | 0.018 |
| CS1388FC_S | 55.483 | 0.001 |
| estSNP05335 | 55.484 | 0.001 |
| gSNP07416 | 55.503 | 0.019 |
| gSNP05113 | 55.521 | 0.018 |
| gSNP05914 | 55.521 | 0 |
| gSNP07605 | 55.521 | 0 |
| estSNP03114 | 55.521 | 0 |
| gSNP03744C1_134 | 56.184 | 0.663 |
| estSNP04258 | 56.239 | 0.055 |
| estSNP05333 | 56.239 | 0 |
| gSNP08453 | 56.239 | 0 |
| estSNP05795 | 56.387 | 0.148 |
| estSNP04117 | 56.731 | 0.344 |
| gSNP03243 | 56.862 | 0.131 |
| estSNP00817 | 57.662 | 0.8 |
| gSNP07644 | 58.986 | 1.324 |
| estSNP05713 | 63.624 | 4.638 |
| estSNP05585 | 64.905 | 1.281 |
| gSNP07719 | 70.982 | 6.077 |
| gSNP11765 | 76.806 | 5.824 |
| estSNP00484 | 76.806 | 0 |
| estSNP04318 | 78.047 | 1.241 |
| gSNP06760 | 82.04 | 3.993 |
| gSNP01708 | 83.843 | 1.803 |
| gSNP05059 | 88.766 | 4.923 |
| estSNP04709 | 88.796 | 0.03 |
| estSNP04878 | 89.213 | 0.417 |
| gSNP11996 | 92.323 | 3.11 |
| gSNP03632 | 92.525 | 0.202 |
| gSNP05687 | 92.696 | 0.171 |
| gSNP11767 | 96.417 | 3.721 |
| gSNP03509 | 97.067 | 0.65 |
| gSNP11663 | 97.067 | 0 |
| estSNP03574 | 97.664 | 0.597 |
| estSNP05137 | 97.664 | 0 |
| HS4_rep_c19858_ES | 98.283 | 0.619 |
| estSNP00631 | 98.348 | 0.065 |
| estSNP05250 | 99.242 | 0.894 |
| estSNP04723 | 99.811 | 0.569 |
| estSNP04722 | 99.811 | 0 |
| HS4_c49514_ES | 99.898 | 0.087 |
| gSNP07747 | 100.155 | 0.257 |
| gSNP01294 | 100.306 | 0.151 |
| gSNP01392 | 100.306 | 0 |
| estSNP05332 | 102.888 | 2.582 |
| gSNP08939 | 102.888 | 0 |
| estSNP02101 | 103.475 | 0.587 |
| estSNP02690 | 106.021 | 2.546 |