Home > スギ 葉緑体DNA SSRマーカー情報
更新日：2022年1月28日
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スギ 葉緑体DNA SSRマーカー情報
| スギ 葉緑体DNA SSRマーカー情報 | |||||||
| Locus | Primer sequences (5'-3') | Location | Repeat motif | Fluor | Size range (bp) | No. of alleles | Diversity index (H) |
| Mononucleotide motif | |||||||
| CjCP1m_001 | F:M13-CCTATTTGCTCGACGGACA | psbJ-clpP spacer | (A)12 | FAM | 119-121 | 3 | 0.166 |
| R:ACCGGCAATAATACCGACTC | |||||||
| CjCP1m_002 | F:M13-GATCTGTCCAACGAATTCACG | accD-rbcL spacer | (T)17 | HEX | 156-159 | 4 | 0.526 |
| R:TGAATCGGCTTTGTCCGG | |||||||
| CjCP1m_003 | F:M13-TGAAAGATTTCATAGGTTCCACG | trnV-ndhC spacer | (T)16 | NED | 211-214 | 4 | 0.344 |
| R:GCGTTACTGCTGAGTGTG | |||||||
| CjCP1m_004 | F:M13-ATCTTCCGAACTTGTGATTCG | chlL-trnH spacer | (T)11 | FAM | 172-173 | 2 | 0.391 |
| R:TCCTCCATTTACTCAGGAGAG | |||||||
| CjCP1m_005 | F:M13-ACAAAGTGGTTATAGCTCGTTGA | matK-chlB spacer | (A)11 | HEX | 199-201 | 3 | 0.560 |
| R:ACGACATGATTAGTTCTGTGG | |||||||
| CjCP1m_006 | F:M13-AGTAAGTCTTTTAATTCGACCGG | rps15-rpl32 spacer | (A)12 | NED | 294-295 | 2 | 0.369 |
| R:TCTTGCTGGTATGGTCGC | |||||||
| CjCP1m_007 | F:M13-TGCGTTTTTTTGGTACAGCCA | rpl32-ndhF spacer | (T)12 | FAM | 229-232 | 4 | 0.558 |
| R:TCGTGGATCCCCTATTGC | |||||||
| Dinucleotide motif | |||||||
| CjCP2m_001 | F:M13-GGATTGAACAAATTTTGACTCCCA | ycf4-psaI spacer | (AT)9 | FAM | 263-269 | 4 | 0.409 |
| R:ACATTTGAATAGAGAGATTCGT | |||||||
| CjCP2m_002 | F:M13-TTGTAGCTCTACGTGGCA | rps11-rpl36 spacer | (AT)8 | HEX | 319-321 | 2 | 0.085 |
| R:CCTAATTCGTAGACGGAAACG | |||||||
| CjCP2m_003 | F:M13-CCCTTCCCAAACTGTACAAGC | rpl2 intron | (AT)10 A(AT)5 | NED | 179-183 | 3 | 0.304 |
| R:AGGACATAAGGAATTTAAAGTATCCCC | |||||||
| CjCP2m_004 | F:M13-TTAGGGCTCCGGCGTATA | rps12-5'-rpl20 spacer | (TA)6 | FAM | 150-154 | 3 | 0.201 |
| R:AGTAGGCAAGGGATTGGACC | |||||||
| CjCP2m_005 | F:M13-TGATCCATCTGACTCACT | accD-rbcL spacer | (TA)8 | HEX | 168-170 | 2 | 0.085 |
| R:ATCAGAAGCGGAATTTGA | |||||||
| CjCP2m_006 | F:M13-CCATTCGATCCCTATCCGG | psbZ-trnS spacer | (AT)10 | FAM | 249-257 | 5 | 0.345 |
| R:GAGCCATCAACCACTCGG | |||||||
| CjCP2m_007 | F:M13-TGTACCCCGGTGTGGAAC | atpI-atpH spacer | (TA)5 CTA(AT)6 | HEX | 295-297 | 3 | 0.379 |
| R:TGAAACAACTAAACTCCGACG | |||||||
| CjCP2m_008 | F:M13-AGATCGTGAGGGTTCGAGT | trnL-trnF spacer | (TA)23 | NED | 307-337 | 13 | 0.895 |
| R:GCATCATACTAGCACAGTAACC | |||||||
| CjCP2m_009 | F:M13-ATCCCGAAGGATTCGGAG | trnV-rps12-3' spacer | (AT)10 | FAM | 116-122 | 3 | 0.334 |
| R:TGGAAACTTGATTGGGCAG | |||||||
| CjCP2m_010 | F:M13-AGCTCCTCTGACTTTGGC | ccsA-petA spacer | (AT)9 | HEX | 252-256 | 3 | 0.273 |
| R:TCCCTAGTTATGCGCGAC | |||||||
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